The TIGR Gene Indices: clustering and assembling EST and known genes and integration with eukaryotic genomes
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چکیده
منابع مشابه
The TIGR Gene Indices: clustering and assembling EST and known genes and integration with eukaryotic genomes
Although the list of completed genome sequencing projects has expanded rapidly, sequencing and analysis of expressed sequence tags (ESTs) remain a primary tool for discovery of novel genes in many eukaryotes and a key element in genome annotation. The TIGR Gene Indices (http://www.tigr.org/tdb/tgi) are a collection of 77 species-specific databases that use a highly refined protocol to analyze g...
متن کاملTIGR Gene Indices clustering tools (TGICL): a software system for fast clustering of large EST datasets
TGICL is a pipeline for analysis of large Expressed Sequence Tags (EST) and mRNA databases in which the sequences are first clustered based on pairwise sequence similarity, and then assembled by individual clusters (optionally with quality values) to produce longer, more complete consensus sequences. The system can run on multi-CPU architectures including SMP and PVM.
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ژورنال
عنوان ژورنال: Nucleic Acids Research
سال: 2004
ISSN: 1362-4962
DOI: 10.1093/nar/gki064